Shopify + QuickBooks Integration

Automate Shopify sales straight into QuickBooks.

Stop manually re-keying orders and reconciling payouts. We post Shopify orders, payments, fees and refunds to QuickBooks Online automatically — with settlement reconciliation and real-time, two-way sync across every store.

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What posts to QuickBooks automatically

Clean, reconciled books without the spreadsheet gymnastics.

Sales & Invoices

Each Shopify order posts as an invoice or sales receipt with line-item detail.

Payments & Fees

Payments, processor fees and refunds mapped to the right accounts.

Settlements

Payout batches reconciled against bank deposits automatically.

Tax

Sales tax captured and mapped to the correct tax codes and ledgers.

Reconciliation that actually balances

The hard part of Shopify-to-QuickBooks is matching payouts to deposits. That's exactly what we automate.

Settlement reconciliation

Match Shopify Payments payouts to bank deposits so your books reconcile cleanly.

Real-time posting

Orders flow to QuickBooks as they happen, not in error-prone batch dumps.

Account mapping

Revenue, fees, shipping, discounts and tax mapped to your chart of accounts.

Multi-store rollup

Consolidate several Shopify stores into one QuickBooks company file.

How it looks in production

Shopify orders and payouts reconciled into QuickBooks Online through our integration layer.

Shopify + QuickBooks

Automated Sales Posting & Settlement Reconciliation

Shopify Orders → Integration Layer → QuickBooks Invoices
Shopify Payouts → Reconciliation Engine → QuickBooks Deposits Real-time posting · fees & refunds mapped · payouts matched to deposits
0
Manual Journal Entries
Auto
Settlement Matching
Real-time
Sales Posting
Clean
Monthly Close

Shopify QuickBooks FAQs

Does it support QuickBooks Online and Desktop?

We primarily integrate with QuickBooks Online, and can connect QuickBooks Desktop/POS where an API or connector is available.

Do you handle Shopify Payments fees and payouts?

Yes. Processor fees, refunds and payout batches are mapped and reconciled against your bank deposits.

Can orders post as summarized journal entries instead of individual invoices?

Yes. We can post per-order detail or daily summaries depending on how your accountant prefers to work.

Does it work with multiple Shopify stores?

Yes, several stores can roll up into a single QuickBooks company file with store-level tracking.

Ready to automate your Shopify books?

Get a free automation assessment — we'll map your Shopify orders, fees and payouts to QuickBooks and show you a reconciliation that balances.

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